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New, on BioRxiv:

Alterations in chromosome spatial compartmentalization classify prostate cancer progression

San Martin R, Das P, DosReis R, Xu Y, McCord RP.

[Preprint] April 15, 2021

Das P, Shen T, McCord RP. Inferring chromosome radial organization from Hi-C data. BMC Bioinformatics. 2020 Nov 10;21(1):511. doi: 10.1186/s12859-020-03841-7. PubMed PMID: 33167851; PubMed Central PMCID: PMC7654587

Sanders JT, Freeman TF, Xu Y, Golloshi R, Stallard MA, San Martin R, Balajee AS, McCord RP.

Radiation-induced DNA damage and repair effects on 3D genome organization

Nat Commun 11, 6178 (2020)

Golloshi R, San Martin R, Das P, Raines TI, Thurston D, Freeman TF, McCord RP.

Constricted migration contributes to persistent 3D genome structure changes associated with an invasive phenotype in melanoma cells.

BioRxiv 856583 [Preprint] November 26, 2019.

Das P, Golloshi R, McCord RP, and Shen T (2020) Using contact statistics to characterize structure transformation of biopolymer ensembles.
Physical Review E

Golloshi R, Sanders JT, McCord RP

Iteratively improving Hi-C experiments one step at a time. Methods (2018)

McCord RP Chromosome biology: How to build a cohesive genome in 3D. Nature 551, 38–40 (2017)

This is the original drawing I sent Nature to explain my figure idea. You can see the professional-looking version they produced at the article link– without the fun faces!

Golloshi R, Sanders JT, McCord RP (2017) Genome organization during the cell cycle: unity in division. Wiley Interdiscip Rev Syst Biol Med.

  • Crane E*, Bian Q*, McCord RP*, Lajoie BR*, Wheeler BS, Ralston EJ, Uzawa S, Dekker J, Meyer BJ. (2015) Condensin-driven remodelling of X chromosome topology during dosage compensation. Nature 523(7559):240-4.
  • McCord RP, Nazario-Toole A, Zhang H, Chines PS, Zhan Y, Erdos MR, Collins FS, Dekker J, Cao K. (2013) Correlated alterations in genome organization, histone methylation, and DNA-lamin A/C interactions in Hutchinson-Gilford progeria syndrome. Genome Res. 23(2):260-9
  • Zhang Y*, McCord RP*, Ho YJ, Lajoie BR, Hildebrand DG, Simon AC, Becker MS, Alt FW, Dekker J. (2012) Spatial organization of the mouse genome and its role in recurrent chromosomal translocations. Cell 148(5):908-21.